Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae.
Identifieur interne : 002685 ( Main/Exploration ); précédent : 002684; suivant : 002686Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae.
Auteurs : Xiao Lin [République populaire de Chine] ; Yu Zhang ; Hanhui Kuang ; Jiongjiong ChenSource :
- BMC genomics [ 1471-2164 ] ; 2013.
Descripteurs français
- KwdFr :
- Amorces ADN (génétique), Cartographie chromosomique (MeSH), Cucurbitaceae (génétique), Cucurbitaceae (immunologie), Données de séquences moléculaires (MeSH), Dosage génique (génétique), Duplication de gène (MeSH), Exons (génétique), Génotype (MeSH), Introns (génétique), Locus génétiques (génétique), Maladies des plantes (génétique), Phylogenèse (MeSH), Pseudogènes (génétique), Résistance à la maladie (génétique), Spécificité d'espèce (MeSH), Séquence nucléotidique (MeSH), Variation génétique (génétique), Évolution moléculaire (MeSH).
- MESH :
- génétique : Amorces ADN, Cucurbitaceae, Dosage génique, Exons, Introns, Locus génétiques, Maladies des plantes, Pseudogènes, Résistance à la maladie, Variation génétique.
- immunologie : Cucurbitaceae.
- Cartographie chromosomique, Données de séquences moléculaires, Duplication de gène, Génotype, Phylogenèse, Spécificité d'espèce, Séquence nucléotidique, Évolution moléculaire.
English descriptors
- KwdEn :
- Base Sequence (MeSH), Chromosome Mapping (MeSH), Cucurbitaceae (genetics), Cucurbitaceae (immunology), DNA Primers (genetics), Disease Resistance (genetics), Evolution, Molecular (MeSH), Exons (genetics), Gene Dosage (genetics), Gene Duplication (MeSH), Genetic Loci (genetics), Genetic Variation (genetics), Genotype (MeSH), Introns (genetics), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Plant Diseases (genetics), Pseudogenes (genetics), Species Specificity (MeSH).
- MESH :
- chemical , genetics : DNA Primers.
- genetics : Cucurbitaceae, Disease Resistance, Exons, Gene Dosage, Genetic Loci, Genetic Variation, Introns, Plant Diseases, Pseudogenes.
- immunology : Cucurbitaceae.
- Base Sequence, Chromosome Mapping, Evolution, Molecular, Gene Duplication, Genotype, Molecular Sequence Data, Phylogeny, Species Specificity.
Abstract
BACKGROUND
The sequenced genomes of cucumber, melon and watermelon have relatively few R-genes, with 70, 75 and 55 copies only, respectively. The mechanism for low copy number of R-genes in Cucurbitaceae genomes remains unknown.
RESULTS
Manual annotation of R-genes in the sequenced genomes of Cucurbitaceae species showed that approximately half of them are pseudogenes. Comparative analysis of R-genes showed frequent loss of R-gene loci in different Cucurbitaceae species. Phylogenetic analysis, data mining and PCR cloning using degenerate primers indicated that Cucurbitaceae has limited number of R-gene lineages (subfamilies). Comparison between R-genes from Cucurbitaceae and those from poplar and soybean suggested frequent loss of R-gene lineages in Cucurbitaceae. Furthermore, the average number of R-genes per lineage in Cucurbitaceae species is approximately 1/3 that in soybean or poplar. Therefore, both loss of lineages and deficient duplications in extant lineages accounted for the low copy number of R-genes in Cucurbitaceae. No extensive chimeras of R-genes were found in any of the sequenced Cucurbitaceae genomes. Nevertheless, one lineage of R-genes from Trichosanthes kirilowii, a wild Cucurbitaceae species, exhibits chimeric structures caused by gene conversions, and may contain a large number of distinct R-genes in natural populations.
CONCLUSIONS
Cucurbitaceae species have limited number of R-gene lineages and each genome harbors relatively few R-genes. The scarcity of R-genes in Cucurbitaceae species was due to frequent loss of R-gene lineages and infrequent duplications in extant lineages. The evolutionary mechanisms for large variation of copy number of R-genes in different plant species were discussed.
DOI: 10.1186/1471-2164-14-335
PubMed: 23682795
PubMed Central: PMC3679737
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae.</title><author><name sortKey="Lin, Xiao" sort="Lin, Xiao" uniqKey="Lin X" first="Xiao" last="Lin">Xiao Lin</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticulture Biology, Ministry of Education, and Department of Vegetable Crops, College of Horticulture and Forestry, Huazhong Agricultural University, Wuhan 430070, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticulture Biology, Ministry of Education, and Department of Vegetable Crops, College of Horticulture and Forestry, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><placeName><settlement type="city">Wuhan</settlement><region type="région">Hubei</region></placeName></affiliation></author><author><name sortKey="Zhang, Yu" sort="Zhang, Yu" uniqKey="Zhang Y" first="Yu" last="Zhang">Yu Zhang</name></author><author><name sortKey="Kuang, Hanhui" sort="Kuang, Hanhui" uniqKey="Kuang H" first="Hanhui" last="Kuang">Hanhui Kuang</name></author><author><name sortKey="Chen, Jiongjiong" sort="Chen, Jiongjiong" uniqKey="Chen J" first="Jiongjiong" last="Chen">Jiongjiong Chen</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2013">2013</date><idno type="RBID">pubmed:23682795</idno><idno type="pmid">23682795</idno><idno type="doi">10.1186/1471-2164-14-335</idno><idno type="pmc">PMC3679737</idno><idno type="wicri:Area/Main/Corpus">002595</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">002595</idno><idno type="wicri:Area/Main/Curation">002595</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">002595</idno><idno type="wicri:Area/Main/Exploration">002595</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae.</title><author><name sortKey="Lin, Xiao" sort="Lin, Xiao" uniqKey="Lin X" first="Xiao" last="Lin">Xiao Lin</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticulture Biology, Ministry of Education, and Department of Vegetable Crops, College of Horticulture and Forestry, Huazhong Agricultural University, Wuhan 430070, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticulture Biology, Ministry of Education, and Department of Vegetable Crops, College of Horticulture and Forestry, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><placeName><settlement type="city">Wuhan</settlement><region type="région">Hubei</region></placeName></affiliation></author><author><name sortKey="Zhang, Yu" sort="Zhang, Yu" uniqKey="Zhang Y" first="Yu" last="Zhang">Yu Zhang</name></author><author><name sortKey="Kuang, Hanhui" sort="Kuang, Hanhui" uniqKey="Kuang H" first="Hanhui" last="Kuang">Hanhui Kuang</name></author><author><name sortKey="Chen, Jiongjiong" sort="Chen, Jiongjiong" uniqKey="Chen J" first="Jiongjiong" last="Chen">Jiongjiong Chen</name></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>Chromosome Mapping (MeSH)</term><term>Cucurbitaceae (genetics)</term><term>Cucurbitaceae (immunology)</term><term>DNA Primers (genetics)</term><term>Disease Resistance (genetics)</term><term>Evolution, Molecular (MeSH)</term><term>Exons (genetics)</term><term>Gene Dosage (genetics)</term><term>Gene Duplication (MeSH)</term><term>Genetic Loci (genetics)</term><term>Genetic Variation (genetics)</term><term>Genotype (MeSH)</term><term>Introns (genetics)</term><term>Molecular Sequence Data (MeSH)</term><term>Phylogeny (MeSH)</term><term>Plant Diseases (genetics)</term><term>Pseudogenes (genetics)</term><term>Species Specificity (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Amorces ADN (génétique)</term><term>Cartographie chromosomique (MeSH)</term><term>Cucurbitaceae (génétique)</term><term>Cucurbitaceae (immunologie)</term><term>Données de séquences moléculaires (MeSH)</term><term>Dosage génique (génétique)</term><term>Duplication de gène (MeSH)</term><term>Exons (génétique)</term><term>Génotype (MeSH)</term><term>Introns (génétique)</term><term>Locus génétiques (génétique)</term><term>Maladies des plantes (génétique)</term><term>Phylogenèse (MeSH)</term><term>Pseudogènes (génétique)</term><term>Résistance à la maladie (génétique)</term><term>Spécificité d'espèce (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Variation génétique (génétique)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA Primers</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Cucurbitaceae</term><term>Disease Resistance</term><term>Exons</term><term>Gene Dosage</term><term>Genetic Loci</term><term>Genetic Variation</term><term>Introns</term><term>Plant Diseases</term><term>Pseudogenes</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Amorces ADN</term><term>Cucurbitaceae</term><term>Dosage génique</term><term>Exons</term><term>Introns</term><term>Locus génétiques</term><term>Maladies des plantes</term><term>Pseudogènes</term><term>Résistance à la maladie</term><term>Variation génétique</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Cucurbitaceae</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Cucurbitaceae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Chromosome Mapping</term><term>Evolution, Molecular</term><term>Gene Duplication</term><term>Genotype</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term><term>Données de séquences moléculaires</term><term>Duplication de gène</term><term>Génotype</term><term>Phylogenèse</term><term>Spécificité d'espèce</term><term>Séquence nucléotidique</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>The sequenced genomes of cucumber, melon and watermelon have relatively few R-genes, with 70, 75 and 55 copies only, respectively. The mechanism for low copy number of R-genes in Cucurbitaceae genomes remains unknown.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>Manual annotation of R-genes in the sequenced genomes of Cucurbitaceae species showed that approximately half of them are pseudogenes. Comparative analysis of R-genes showed frequent loss of R-gene loci in different Cucurbitaceae species. Phylogenetic analysis, data mining and PCR cloning using degenerate primers indicated that Cucurbitaceae has limited number of R-gene lineages (subfamilies). Comparison between R-genes from Cucurbitaceae and those from poplar and soybean suggested frequent loss of R-gene lineages in Cucurbitaceae. Furthermore, the average number of R-genes per lineage in Cucurbitaceae species is approximately 1/3 that in soybean or poplar. Therefore, both loss of lineages and deficient duplications in extant lineages accounted for the low copy number of R-genes in Cucurbitaceae. No extensive chimeras of R-genes were found in any of the sequenced Cucurbitaceae genomes. Nevertheless, one lineage of R-genes from Trichosanthes kirilowii, a wild Cucurbitaceae species, exhibits chimeric structures caused by gene conversions, and may contain a large number of distinct R-genes in natural populations.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>Cucurbitaceae species have limited number of R-gene lineages and each genome harbors relatively few R-genes. The scarcity of R-genes in Cucurbitaceae species was due to frequent loss of R-gene lineages and infrequent duplications in extant lineages. The evolutionary mechanisms for large variation of copy number of R-genes in different plant species were discussed.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23682795</PMID><DateCompleted><Year>2013</Year><Month>10</Month><Day>30</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>14</Volume><PubDate><Year>2013</Year><Month>May</Month><Day>17</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae.</ArticleTitle><Pagination><MedlinePgn>335</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2164-14-335</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The sequenced genomes of cucumber, melon and watermelon have relatively few R-genes, with 70, 75 and 55 copies only, respectively. The mechanism for low copy number of R-genes in Cucurbitaceae genomes remains unknown.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Manual annotation of R-genes in the sequenced genomes of Cucurbitaceae species showed that approximately half of them are pseudogenes. Comparative analysis of R-genes showed frequent loss of R-gene loci in different Cucurbitaceae species. Phylogenetic analysis, data mining and PCR cloning using degenerate primers indicated that Cucurbitaceae has limited number of R-gene lineages (subfamilies). Comparison between R-genes from Cucurbitaceae and those from poplar and soybean suggested frequent loss of R-gene lineages in Cucurbitaceae. Furthermore, the average number of R-genes per lineage in Cucurbitaceae species is approximately 1/3 that in soybean or poplar. Therefore, both loss of lineages and deficient duplications in extant lineages accounted for the low copy number of R-genes in Cucurbitaceae. No extensive chimeras of R-genes were found in any of the sequenced Cucurbitaceae genomes. Nevertheless, one lineage of R-genes from Trichosanthes kirilowii, a wild Cucurbitaceae species, exhibits chimeric structures caused by gene conversions, and may contain a large number of distinct R-genes in natural populations.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">Cucurbitaceae species have limited number of R-gene lineages and each genome harbors relatively few R-genes. The scarcity of R-genes in Cucurbitaceae species was due to frequent loss of R-gene lineages and infrequent duplications in extant lineages. The evolutionary mechanisms for large variation of copy number of R-genes in different plant species were discussed.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lin</LastName><ForeName>Xiao</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Key Laboratory of Horticulture Biology, Ministry of Education, and Department of Vegetable Crops, College of Horticulture and Forestry, Huazhong Agricultural University, Wuhan 430070, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Yu</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Kuang</LastName><ForeName>Hanhui</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Jiongjiong</ForeName><Initials>J</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>05</Month><Day>17</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Genomics</MedlineTA><NlmUniqueID>100965258</NlmUniqueID><ISSNLinking>1471-2164</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D017931">DNA Primers</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019662" MajorTopicYN="N">Cucurbitaceae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017931" MajorTopicYN="N">DNA Primers</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005091" MajorTopicYN="N">Exons</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018628" MajorTopicYN="N">Gene Dosage</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020440" MajorTopicYN="Y">Gene Duplication</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D056426" MajorTopicYN="N">Genetic Loci</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007438" MajorTopicYN="N">Introns</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011544" MajorTopicYN="N">Pseudogenes</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>01</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>05</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>5</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>5</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2013</Year><Month>10</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">23682795</ArticleId><ArticleId IdType="pii">1471-2164-14-335</ArticleId><ArticleId IdType="doi">10.1186/1471-2164-14-335</ArticleId><ArticleId IdType="pmc">PMC3679737</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Plant J. 1999 Nov;20(3):317-32</Citation><ArticleIdList><ArticleId IdType="pubmed">10571892</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 1999 Nov;11(11):2099-112</Citation><ArticleIdList><ArticleId IdType="pubmed">10559437</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2012 Jan;40(Database issue):D290-301</Citation><ArticleIdList><ArticleId IdType="pubmed">22127870</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Bot. 2007 Jul;94(7):1256-66</Citation><ArticleIdList><ArticleId IdType="pubmed">21636491</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2012 May;159(1):336-54</Citation><ArticleIdList><ArticleId IdType="pubmed">22457424</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Evol. 2010 Feb;70(2):137-48</Citation><ArticleIdList><ArticleId IdType="pubmed">20044783</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2013;14:109</Citation><ArticleIdList><ArticleId IdType="pubmed">23418910</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2011 Jan;28(1):313-25</Citation><ArticleIdList><ArticleId IdType="pubmed">20713469</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2002 May;104(6-7):1055-1063</Citation><ArticleIdList><ArticleId IdType="pubmed">12582612</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2011 Jul 14;475(7355):189-95</Citation><ArticleIdList><ArticleId IdType="pubmed">21743474</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2012 Jun 15;28(12):1647-9</Citation><ArticleIdList><ArticleId IdType="pubmed">22543367</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2001 Sep;27(5):439-53</Citation><ArticleIdList><ArticleId IdType="pubmed">11576428</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2012 May;159(1):197-210</Citation><ArticleIdList><ArticleId IdType="pubmed">22422941</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Phylogenet Evol. 2007 Jul;44(1):315-24</Citation><ArticleIdList><ArticleId IdType="pubmed">17395495</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2004 Nov;16(11):2870-94</Citation><ArticleIdList><ArticleId IdType="pubmed">15494555</ArticleId></ArticleIdList></Reference><Reference><Citation>Genes Dev. 2011 Dec 1;25(23):2540-53</Citation><ArticleIdList><ArticleId IdType="pubmed">22156213</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2011 Oct;28(10):2731-9</Citation><ArticleIdList><ArticleId IdType="pubmed">21546353</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Evol. 2000 Mar;50(3):203-13</Citation><ArticleIdList><ArticleId IdType="pubmed">10754062</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2008 Apr;54(1):69-80</Citation><ArticleIdList><ArticleId IdType="pubmed">18182023</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2008 Apr 24;452(7190):991-6</Citation><ArticleIdList><ArticleId IdType="pubmed">18432245</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2012 Nov 29;491(7426):705-10</Citation><ArticleIdList><ArticleId IdType="pubmed">23192148</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2001 Aug 28;98(18):10493-8</Citation><ArticleIdList><ArticleId IdType="pubmed">11517316</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2008 Jan;146(1):5-21</Citation><ArticleIdList><ArticleId IdType="pubmed">17981990</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2004 Jun;38(5):810-22</Citation><ArticleIdList><ArticleId IdType="pubmed">15144382</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2002 Jan;19(1):76-84</Citation><ArticleIdList><ArticleId IdType="pubmed">11752192</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2003 May 1;423(6935):74-7</Citation><ArticleIdList><ArticleId IdType="pubmed">12721627</ArticleId></ArticleIdList></Reference><Reference><Citation>Cell. 1997 Dec 12;91(6):821-32</Citation><ArticleIdList><ArticleId IdType="pubmed">9413991</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 2009 Dec;41(12):1275-81</Citation><ArticleIdList><ArticleId IdType="pubmed">19881527</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2013 Apr 4;496(7443):91-5</Citation><ArticleIdList><ArticleId IdType="pubmed">23535592</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Genet Genomics. 2008 Sep;280(3):187-98</Citation><ArticleIdList><ArticleId IdType="pubmed">18563445</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1999 Jan 5;96(1):302-6</Citation><ArticleIdList><ArticleId IdType="pubmed">9874813</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Biol. 2005 May 24;15(10):968-73</Citation><ArticleIdList><ArticleId IdType="pubmed">15916955</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2002 Dec;12(12):1871-84</Citation><ArticleIdList><ArticleId IdType="pubmed">12466291</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1986 Apr;112(4):887-98</Citation><ArticleIdList><ArticleId IdType="pubmed">17246322</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15843-8</Citation><ArticleIdList><ArticleId IdType="pubmed">9861058</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2004 Aug;39(3):283-97</Citation><ArticleIdList><ArticleId IdType="pubmed">15255859</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2005 Oct;44(1):37-51</Citation><ArticleIdList><ArticleId IdType="pubmed">16167894</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11872-7</Citation><ArticleIdList><ArticleId IdType="pubmed">22753475</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2000 May;12(5):663-76</Citation><ArticleIdList><ArticleId IdType="pubmed">10810142</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 1999 Mar;11(3):495-506</Citation><ArticleIdList><ArticleId IdType="pubmed">10072407</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2004;32(5):1792-7</Citation><ArticleIdList><ArticleId IdType="pubmed">15034147</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 1989 Sep;6(5):526-38</Citation><ArticleIdList><ArticleId IdType="pubmed">2677599</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2011 Mar;122(4):795-803</Citation><ArticleIdList><ArticleId IdType="pubmed">21104067</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1999 Apr;151(4):1581-9</Citation><ArticleIdList><ArticleId IdType="pubmed">10101179</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 2013 Jan;45(1):51-8</Citation><ArticleIdList><ArticleId IdType="pubmed">23179023</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2003 Apr;15(4):809-34</Citation><ArticleIdList><ArticleId IdType="pubmed">12671079</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Biol. 2003 Sep 2;13(17):1512-7</Citation><ArticleIdList><ArticleId IdType="pubmed">12956953</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2006 Feb;172(2):1243-50</Citation><ArticleIdList><ArticleId IdType="pubmed">16452149</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Genet Genomics. 2010 May;283(5):427-38</Citation><ArticleIdList><ArticleId IdType="pubmed">20217430</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 2010 Oct;42(10):833-9</Citation><ArticleIdList><ArticleId IdType="pubmed">20802477</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11525-30</Citation><ArticleIdList><ArticleId IdType="pubmed">12172007</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1790-5</Citation><ArticleIdList><ArticleId IdType="pubmed">22307647</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 1998 Nov;10(11):1861-74</Citation><ArticleIdList><ArticleId IdType="pubmed">9811794</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2010 Oct;38(19):6513-25</Citation><ArticleIdList><ArticleId IdType="pubmed">20542917</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><region><li>Hubei</li></region><settlement><li>Wuhan</li></settlement></list><tree><noCountry><name sortKey="Chen, Jiongjiong" sort="Chen, Jiongjiong" uniqKey="Chen J" first="Jiongjiong" last="Chen">Jiongjiong Chen</name><name sortKey="Kuang, Hanhui" sort="Kuang, Hanhui" uniqKey="Kuang H" first="Hanhui" last="Kuang">Hanhui Kuang</name><name sortKey="Zhang, Yu" sort="Zhang, Yu" uniqKey="Zhang Y" first="Yu" last="Zhang">Yu Zhang</name></noCountry><country name="République populaire de Chine"><region name="Hubei"><name sortKey="Lin, Xiao" sort="Lin, Xiao" uniqKey="Lin X" first="Xiao" last="Lin">Xiao Lin</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002685 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 002685 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:23682795
|texte= Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:23682795" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |